PUBLICATIONS

SELECTED Publications:

• S. Atasoy, I. Donnelly, J. Pearson, Human brain networks function in connectome-specific harmonic wavesNature Communications, vol. 7 (10340), 2016, doi:10.1038/ncomms10340.

• S. Atasoy, L. Roseman, M. Kaelen, M. L. Kringelbach, G. Deco, R. L. Carhart-Harris, Connectome-harmonic decomposition of human brain activity reveals dynamical repertoire re-organisation under LSD, Scientific Reports, 7 (17661), 2017, doi:10.1038/s41598-017-17546-0

• S. Atasoy, G. Deco, M. L. Kringelbach, J. Pearson: Harmonic brain modes: a unifying framework for linking space and time in brain dynamics, The Neuroscientist, 2017.

OTHER Journal Publications:

• L. D Lord, P. Expert, S. Atasoy, L. Roseman, K. Rapuano, R. Lambiotte, D. J. Nutt, G. Deco, G., R. L. Carhart-Harris, M. L. Kringelbach, J. Cabral: Dynamical exploration of the repertoire of brain networks at rest is modulated by psilocybinNeuroImage, 2019.

• S. Atasoy, J. Vohryzek, G. Deco, R. L. Carhart-Harris, M. L. Kringelbach: Common neural signatures of psychedelics: Frequency-specific energy changes and repertoire expansion revealed using connectome-harmonic decomposition. Progress in brain research, 242, 97-120, 2018.

• S. Atasoy, D. Mateus, A. Meining, G.Z. Yang, N. Navab: Endoscopic Video Manifolds for Targeted Optical Biopsy, IEEE Transactions on Medical Imaging, vol. 31(3), 2012.

• A. Meining, S. Atasoy , A. Chung, N. Navab , G.Z. Yang: “Eye-tracking” for assessment of image perception in gastrointestinal endoscopy with narrow-band imaging compared with white light endoscopy, Endoscopy, 2010.

 

Peer-Reviewed International Conference Publications:

• S. Atasoy, D. Mateus, A. Meining, G.Z. Yang, N. Navab: Targeted Optical Biopsy for Surveillance Endoscopies, Medical Image Computing and Computer Assisted Intervention (MICCAI), Springer Berlin Heidelberg, 2011. 

• S. Atasoy, D. Mateus, A. Georgiou, N. Navab, G.Z. Yang: Wave Interference for Pattern Description, Asian Conference on Computer Vision (ACCV) , Springer Berlin Heidelberg, 2010.

• S. Atasoy, D. Mateus, J. Lallemand, A. Meining, G.Z. Yang, N. Navab: Endoscopic Video Manifolds, Medical Image Computing and Computer Assisted Intervention (MICCAI), Springer Berlin Heidelberg, 2010. 

• A. Meining, S. Atasoy , N. Navab, A. J. Chung, G.Z. Yang: Narrow Band Imaging Does Not Accelerate Detection of Gastrointestinal Lesions? A Study using ”EYE-TRACKING” in Non-Endoscopic Experts, GASTRO , London, UK, November 21-25 2009.

• S. Atasoy, B. Glocker, S. Giannarou, D. Mateus, A. Meining, G.Z. Yang, N. Navab: Probabilistic Region Matching in Narrow-Band Endoscopy for Targeted Optical Biopsy, Medical Image Computing and Computer Assisted Intervention (MICCAI), Springer Berlin Heidelberg, 2009. 

• V. Castaneda, S. Atasoy , D. Mateus, N. Navab and A. Meining (MD): Reconstructing the Esophagus Surface from Endoscopic Image Sequences, Russian Bavarian Conference on Bio-Medical Engineering , Germany, Munich, July 2009.

• S. Atasoy, D. Noonan, S. Benhimane, N. Navab, G.Z. Yang: A Global Approach for Automatic Fibroscopic Video Mosaicing in Minimally Invasive Diagnosis, Medical Image Computing and Computer-Assisted Intervention (MICCAI), Springer Berlin Heidelberg, 2008.

• S. Atasoy, M. Groher, D. Zikic, B. Glocker, T. Waggershauser, M. Pfister, N. Navab: Real-Time Respiratory Motion Tracking: Roadmap Correction for Hepatic Artery Catheterizations, SPIE Medical Imaging , International Society for Optics and Photonics, 2008.

 

Conference Abstracts:

• S. Atasoy, L Roseman, M. Kaelen, M. L. Kringelbach, G. Deco, R. Carhart-Harris: Enhanced improvisation in brain processing by LSD: Exploring neural correlates of LSD experience with connectome-specific harmonic waves, Psychedelic Science 2017, Oakland, United States, April 19-24 2017 (oral presentation).

• S. Atasoy, I. Donnelly, J. Pearson: Connectome Harmonic Signatures of (Un)conscious Neurodynamics, Association for Scientific Study of Consciousness - ASSC19, Paris, France, July 7-10 2015.

• S. Atasoy, I. Donnelly, J. Pearson: Standing Wave Theory of Consciousness: A self-organizing neural reaction-diffusion model of (un)conscious neural dynamics, Association for Scientific Study of Consciousness - ASSC18, Queensland, Australia, July 16-19 2014.

• S. Atasoy, I. Donnelly, J. Pearson: Perspectives From The Standing Wave Theory Of Consciousness, Towards a Science of Consciousness - TSC, Tucson, Arizona, USA, April 21-26 2014 (oral presentation).

• S. Atasoy, J. Pearson: Spectral Theory of Consciousness, Association for Scientific Study of Consciousness - ASSC17, San Diego, USA, July 12-15 2013.

Book Chapters:

 • D. Mateus, C. Wachinger, S. Atasoy , L. Schwarz and N. Navab: Learning manifolds: design analysis for medical applications, Suzuki Kenji (Ed.), Machine Learning in Computer-Aided Diagnosis: Medical Imaging Intelligence and Analysis IGI Global, 2011.

 

Ph.D. Thesis:

 • S. Atasoy, Endoscopic Video Manifolds for Scene Recognition in Targeted Optical Biopsy, Ph.D. thesis, Technical University of Munich (TUM), Germany, 2012.

 

Views & Commentaries:

 • S. Atasoy, Is anyone there? About consciousness and its disorders, The Conversation, 2016.