PUBLICATIONS
SELECTED JOURNAL PUBLICATIONS:
• Atasoy, S., Donnelly, I., & Pearson, J. (2016). Human brain networks function in connectome-specific harmonic waves. Nature communications, 7(1), 1-10. doi:10.1038/ncomms10340.
• Atasoy, S., Roseman, L., Kaelen, M., Kringelbach, M. L., Deco, G., & Carhart-Harris, R. L. (2017). Connectome-harmonic decomposition of human brain activity reveals dynamical repertoire re-organization under LSD. Scientific reports, 7(1), 1-18.
• Atasoy, S., Deco, G., Kringelbach, M. L., & Pearson, J. (2018). Harmonic brain modes: a unifying framework for linking space and time in brain dynamics. The Neuroscientist, 24(3), 277-293.
• Glomb, K., Kringelbach, M. L., Deco, G., Hagmann, P., Pearson, J., & Atasoy, S. (2021). Functional harmonics reveal multi-dimensional basis functions underlying cortical organization. Cell Reports, 36(8), 109554, doi.org/10.1016/j.celrep.2021.109554
• Rué-Queralt, J., Stevner, A., Tagliazucchi, E., Laufs, H., Kringelbach, M. L., Deco, G., & Atasoy, S. (2021). Decoding brain states on the intrinsic manifold of human brain dynamics across wakefulness and sleep. Communications biology, 4(1), 854. doi.org/10.1038/s42003-021-02369-7
• Luppi, A. I., Vohryzek, J., Kringelbach, M. L., Mediano, P. A. M., Craig, M. M., Adapa, R., Carhart-Harris,R. L., Roseman, L., Pappas, I., Peattie, A. R. D., Manktelow, A. E., Sahakian, B. J., Finoia, P., Williams, G., B., Allanson, J., Pickard, J. D., Menon, D. K., Atasoy, S. & Stamatakis, E. A. (2021). Distributed harmonic patterns of structure-function dependence orchestrate human consciousness. Communications biology, 6(1), 117.
OTHER JOURNAL PUBLICATIONS:
• Jobst, B. M., Atasoy, S., Ponce-Alvarez, A., Sanjuán, A., Roseman, L., Kaelen, M., Kringelbach, M. L., & Deco, G. (2021). Increased sensitivity to strong perturbations in a whole-brain model of LSD. NeuroImage, 230, 117809.
• Aqil, M., Atasoy, S., Kringelbach, M. L., & Hindriks, R. (2021). Graph neural fields: a framework for spatiotemporal dynamical models on the human connectome. PLoS computational biology, 17(1), e1008310.
• Naze, S., Proix, T., Atasoy, S., & Kozloski, J. R. (2021). Robustness of connectome harmonics to local gray matter and long-range white matter connectivity changes. NeuroImage, 224, 117364.
• Atasoy, S., Deco, G., & Kringelbach, M. L. (2020). Harmonic waves as the fundamental principle underlying temporo-spatial dynamics of brain and mind. Comment on" Is temporo-spatial dynamics the" common currency" of brain and mind? In Quest of" Spatiotemporal Neuroscience"" Georg Northoff et al. Physics of life reviews, 33, 67-69.
• Vila-Vidal, M., Capouskova, K., Atasoy, S., Kringelbach, M. L., & Deco, G. (2020). Uncovering the spatiotemporal scales of common neuro-mental constructs. Comment on" Is temporo-spatial dynamics the'common currency'of brain and mind? In Quest of'Spatiotemporal Neuroscience'" by Georg Northoff et al. Physics of life reviews, 33, 64-66.
• Lord, L. D., Expert, P., Atasoy, S., Roseman, L., Rapuano, K., Lambiotte, R., Nutt, D. J., Deco, G., Carhart-Harris, R. L, Kringelbach, M. L., & Cabral, J. (2019). Dynamical exploration of the repertoire of brain networks at rest is modulated by psilocybin. Neuroimage, 199, 127-142.
• Atasoy, S., Vohryzek, J., G. Deco, G., Carhart-Harris, R. L., Kringelbach, M. L. (2018). Common neural signatures of psychedelics: Frequency-specific energy changes and repertoire expansion revealed using connectome-harmonic decomposition. Progress in brain research, 242, 97-120.
• Atasoy, S., Mateus, D., Meining, A., Yang, G. Z., & Navab, N. ( (2012) Endoscopic Video Manifolds for Targeted Optical Biopsy, IEEE Transactions on Medical Imaging, vol. 31, no. 3, pp. 637-653, doi: 10.1109/TMI.2011.2174252.
• Meining, A., Atasoy, S., Chung, A., Navab, N., & Yang, G. Z. (2010). “Eye-tracking” for assessment of image perception in gastrointestinal endoscopy with narrow-band imaging compared with white-light endoscopy. Endoscopy, 42(08), 652-655.
BOOK CHAPTERS:
• Atasoy S., Deco G., Kringelbach M.L. (2019) Playing at the Edge of Criticality: Expanded Whole-Brain Repertoire of Connectome-Harmonics. In: Tomen N., Herrmann J., Ernst U. (eds) The Functional Role of Critical Dynamics in Neural Systems. Springer Series on Bio- and Neurosystems, vol 11. Springer, Cham. https://doi.org/10.1007/978-3-030-20965-0_2
• Atasoy, S., Vohryzek, J., Deco, G., Carhart-Harris, R. L., & Kringelbach, M. L. (2018). Common neural signatures of psychedelics: frequency-specific energy changes and repertoire expansion revealed using connectome-harmonic decomposition. Progress in brain research, 242, 97-120.
• Mateus, D., Wachinger, C., Atasoy, S., Schwarz, L., and Navab, N. (2011) Learning manifolds: design analysis for medical applications, Suzuki Kenji (Ed.), Machine Learning in Computer-Aided Diagnosis: Medical Imaging Intelligence and Analysis IGI Global.
PEER-REVIEWED INTERNATIONAL CONFERENCE PUBLICATIONS:
• Atasoy, S., Mateus, D., Meining, A., Yang, G. Z., & Navab, N. (2011, September). Targeted optical biopsies for surveillance endoscopies. In International Conference on Medical Image Computing and Computer-Assisted Intervention (pp. 83-90). Springer, Berlin, Heidelberg.
• Atasoy, S., Mateus, D., Georgiou, A., Navab, N., & Yang, G. Z. (2010, November). Wave interference for pattern description. In Asian Conference on Computer Vision (pp. 41-54). Springer, Berlin, Heidelberg.
• Atasoy, S., Mateus, D., Lallemand, J., Meining, A., Yang, G. Z., & Navab, N. (2010, September). Endoscopic video manifolds. In International Conference on Medical Image Computing and Computer-Assisted Intervention (pp. 437-445). Springer, Berlin, Heidelberg.
• Meining, A., Atasoy, S., Navab, N., Chung, A. J., & Yang, G. Z. (2009). NARROW BAND IMAGING DOES NOT ACCELERATE DETECTION OF GASTROINTESTINAL LESIONS? A STUDY USING" EYE-TRACKING" IN NON-ENDOSCOPIC EXPERTS. In Gastro.
• Atasoy, S., Glocker, B., Giannarou, S., Mateus, D., Meining, A., Yang, G. Z., & Navab, N. (2009, September). Probabilistic region matching in narrow-band endoscopy for targeted optical biopsy. In International Conference on Medical Image Computing and Computer-Assisted Intervention (pp. 499-506). Springer, Berlin, Heidelberg.
• Atasoy, S., Noonan, D. P., Benhimane, S., Navab, N., & Yang, G. Z. (2008, September). A global approach for automatic fibroscopic video mosaicing in minimally invasive diagnosis. In International Conference on Medical Image Computing and Computer-Assisted Intervention (pp. 850-857). Springer, Berlin, Heidelberg.
• Atasoy, S., Groher, M., Zikic, D., Glocker, B., Waggershauser, T., Pfister, M., & Navab, N. (2008, March). Real-time respiratory motion tracking: roadmap correction for hepatic artery catheterizations. In Medical Imaging 2008: Visualization, Image-Guided Procedures, and Modeling (Vol. 6918, p. 691815). International Society for Optics and Photonics.
CONFERENCE ABSTRACTS:
• Atasoy, S., Roseman, L., Kaelen, M., Kringelbach, M. L., Deco, G., & Carhart-Harris, R.: Enhanced improvisation in brain processing by LSD: Exploring neural correlates of LSD experience with connectome-specific harmonic waves, Psychedelic Science 2017, Oakland, United States, April 19-24 2017 (oral presentation).
• Atasoy, S., Donnelly, I., Pearson, J. (2015) Connectome Harmonic Signatures of (Un)conscious Neurodynamics, Association for Scientific Study of Consciousness - ASSC19, Paris, France, July 7-10 2015.
• Atasoy, S., Donnelly, I., Pearson, J. (2014) Standing Wave Theory of Consciousness: A self-organizing neural reaction-diffusion model of (un)conscious neural dynamics, Association for Scientific Study of Consciousness - ASSC18, Queensland, Australia, July 16-19 2014.
• Atasoy, S., Donnelly, I., Pearson, J. (2014) Perspectives From The Standing Wave Theory Of Consciousness, Towards a Science of Consciousness - TSC, Tucson, Arizona, USA, April 21-26 2014 (oral presentation).
• Atasoy, S., Pearson J. (2013) Spectral Theory of Consciousness, Association for Scientific Study of Consciousness - ASSC17, San Diego, USA, July 12-15 2013.
PH.D. THESIS:
• Atasoy, S., Endoscopic Video Manifolds for Scene Recognition in Targeted Optical Biopsy, Ph.D. thesis, Technical University of Munich (TUM), Germany, 2012.
VIEWS & COMMENTARIES:
• Atasoy, S. Is anyone there? About consciousness and its disorders, The Conversation, 2016.